PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000095.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 531aa    MW: 56174.4 Da    PI: 8.2469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000095.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-057799123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Itr_sc000095.1_g00023.1 77 FVCEICNKGFQRDQNLQLHRRGH 99
                             89*******************88 PP

2zf-C2H215.16.9e-05153175123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k +  +s+Lk H + +
  Itr_sc000095.1_g00023.1 153 WKCEKCSKKYAVQSDLKAHSKIC 175
                              58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-77699No hitNo description
SMARTSM003550.0177799IPR015880Zinc finger, C2H2-like
PfamPF121718.6E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355190118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-5141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-7148173No hitNo description
SMARTSM0035561153173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683153181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MFSGDCRHKE PQNYSIDMRT DADKNDSPGS GEASVSSSEH QAAPPPSKKK RNLPGMPDPD  60
AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC  120
PEPTCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK KYAVQSDLKA HSKICGTKEY  180
RCDCGTLFSR RDSFITHRAF CDVLAEESAK AQEEVVVAPS CEEEPKAASP PPPPQSPPAQ  240
QPSPPPLPPP PPVVPPATTI ISSVPTVKTP ELPGSTNANP NPNPNPSGSM PKQVVEETTV  300
ITSLTGSCSS SSSSSSKVSG SVFASLFASS TAPGSLQPQT SGFTDLFRPM ATERVPEIGP  360
PLSTEPISLC LAMSHGSSIF GQERRQYAPA PQPAMSATAL LQKAAQMGAA SSNSSLLRGL  420
DIMSSTTSSS NPDHEFRGRQ LIDTDGASLT AGLGLGLPCD GGSGLKELML GTPSVFGPKY  480
PTLDLLGLGM AVNGSPTSGL SALMTSIGGN LDIAGSFGGS DFTGKDTGRS S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232386.10.0PREDICTED: zinc finger protein NUTCRACKER isoform X1
SwissprotQ9LVQ71e-169IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA9XLF20.0A9XLF2_PETIN; Uncharacterized protein
STRINGPGSC0003DMT4000330390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-137C2H2-like zinc finger protein